主要論文

1. M. Kajikawa, P. Li, E. Goto, N. Miyashita, M. Aoki-Kawasumi, M. Mito-Yoshida, Y. Sugita, and S. Ishido.:
   "B7-2 is recognized by inter-transmembrane loop of KSHV MIR2,"
   J. Virol. 86 (2012) 5288-5296.
2. F. Ogushi, R. Ishitsuka, T. Kobayashi, and Y. Sugita.:
   "Rapid flip-flop motions of cholesterol, diacylgrycerol, and ceramide in phospholipid bilayers."
   Chem. Phys. Lett. 522 (2012) 96-102.
3. S. Re, N. Miyashita, Y. Yamaguchi, and Y. Sugita.:
   "Structural diversity and changes in conformational equilibria of biantennary complex-type N-glycans in water revealed by replica-exchange molecular dynamics simulation."
   Biophysical Journal (Letter) 101 (2011) L44-L46.
4. Y. Matsumoto, T. Tosha, A. V. Pisliakov, T. Hino, H. Sugimoto, S. Nagano, Y. Sugita, and Y. Shiro.:
   "Crystal structure of Quinol-Dependent Nitric Oxide Reductase from Beobacillus Strearothermophilus."
   Nature Struct. Mol. Biol. 19 (2012) 238-246.
5. T. Mori, F. Ogushi, and Y. Sugita.:
   "Voronoi analysis of lipid surface area in protein-membrane systems."
   J. Comp. Chem. 33 (2012) 286-293.
6. Y. Sugita, M. Ikeguchi and C. Toyoshima.:
   "Insight into the relationship between Ca2+-affinity and shielding of bulk water in the Ca2+-pump from molecular dynamics simulations."
   Proc. Natl. Acad. Sci. USA 107 (2010) 21465-21469.
7. T. Mori, R. Ishitani, T. Tsukazaki, O. Nureki and Y. Sugita.:
   "Molecular Mechanisms Underlying the Early Stage of Protein Translocation through Sec Translocon."
   Biochemistry 49 (2010) 945-950.
8. S. Re, J. Jung, S. Ten-no and Y. Sugita.:
   "Geometrically Associative Yet Electronically Dissociative Character in the Transition State of Enzymatic Reversible Phosphorylation."
   J. Comp. Chem. 32 (2011) 260-270.
9. N. Miyashita, J.E. Straub, D. Thirumalai and Y. Sugita.:
   "Transmembrane Structures of Amyloid Precursor Protein Dimer Predicted by Replica-Exchange Molecular Dynamics Simulations."
   J. Am. Chem. Soc. (Communication) 131 (2009) 3438-3439.
10. T. Tsukazaki, H. Mori, S. Fukai, R. Ishitani, T. Mori, N. Dohmae, A. Perederina, Y. Sugita, D.G. Vassylyev, K. Ito and O. Nureki.:
    "Conformational transition of Sec machinery inferred from bacterial SecYE structures."
    Nature 455 (2008) 988-992.

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