主要論文

1. Otsuka T., Miyazaki T.:
   "A quantum chemistry study of Ds-Pa unnatural DNA base pair"
   Int. J. Quantum Chem., DOI: 10.1002/qua.24094 (2012)
2. Kondo X. H., Okimoto N., Morimoto G., Taiji M.:
   "Free-Energy Landscapes of Protein Domain Movements upon Ligand Binding"
   Journal of Physical Chemistry B, 115, 7629-6636 (2011)
3. Soda K., Shimbo Y., Seki Y., Taiji M.:
   "Structural characteristics of hydration sites in lysozyme"
   Biophys. Chem., 256, 31-42 (2011)
4. Seki Y., Shimbo Y., Nonaka T. Soda K.:
   "A New Efficient Method for Generating Conformations of Unfolded Proteins with Diverse Main-Chain Dihedral-Angle Distributions"
   J. Chem. Theory and Comput., 7, 2126-2136 (2011)
5. Harada M., Murakami H., Okawa A., Okimoto N., Hiraoka S., Nakahara T., Akasaka R., Shiraishi Y., Futatsugi N., Mizutani-Koseki Y., Kuroiwa A., Shirouzu M., Yokoyama S., Taiji M., Iseki S., Ornitz M. D., Koseki H.:
   "FGF9 monomer-dimer equilibrium regulates extracellular matrix affinity and tissue diffusion"
   Nature Genetics, 41:3, 289-298 (2009)
6. Narumi T., Ohno Y., Okimoto N., Koishi T., Suenaga A. Futatsugi N., Yanai R., Himeno R., Fujikawa S., Taiji M., Ikei M.:
   "A 55 TFLOPS Simulation of Amyloid-forming Peptides from Yeast Prion Sup35 with the Special-purpose Computer System MDGRAPE-3"
   in Proceedings of the SC06 (2006)
7. Taiji M., Narumi T., Ohno Y., Futatsugi N., Suenaga A., Takada N., Konagaya A.:
   "Protein explorer: A petaflops special-purpose computer system for molecular dynamics simulations"
   in Proceedings of the SC2003 (2003)

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