主要論文

1. Schmutz, J., Cannon, SB., Schlueter, J., Ma, J., Mitros, T., Nelson, W., Hyten, DL., Song, Q., Thelen, JJ., Cheng, J., Xu, D., Hellsten, U., May, GD., Yu, Y., Sakurai, T., Umezawa, T., Bhattacharyya, MK., Sandhu, D., Valliyodan, B., Lindquist, E., Peto, M., Grant, D., Shu, S., Goodstein, D., Barry, K., Futrell-Griggs, M., Abernathy, B., Du, J., Tian, Z., Zhu, L., Gill, N., Joshi, T., Libault, M., Sethuraman, A., Zhang, XC., Shinozaki, K., Nguyen, HT., Wing, RA., Cregan, P., Specht, J., Grimwood, J., Rokhsar, D., Stacey, G., Shoemaker, RC., and Jackson, SA.:
   "Genome sequence of the palaeopolyploid soybean."
   Nature, 463, 178-183 (2010)
2. Myouga, F., Akiyama, K., Motohashi, R., Kuromori, T., Ito, T., Iizumi, H., Ryusui, R., Sakurai, T., and Shinozaki, K.:
   "The Chloroplast Function Database: a large-scale collection of Arabidopsis Ds/Spm- or T-DNA-tagged homozygous lines for nuclear-encoded chloroplast proteins, and their systematic phenotype analysis."
   Plant Journal, 61, 529-542 (2009)
3. Mochida, K., Yoshida, T., Sakurai, T., Ogihara, Y., and Shinozaki, K.:
   "TriFLDB: A database of Clustered full-length coding sequences from triticeae with applications to comparative grass genomics."
   Plant Physiol., 150, 1135-1146 (2009)
4. Kondou, Y., Higuchi, M., Takahashi, S., Sakurai, T., Ichikawa, T., Kuroda, H., Yoshizumi, T., Tsumoto, Y., Horii, Y., Kawashima, M., Hasegawa, Y., Kuriyama, T., Matsui, K., Kusano, M., Albinsky, D., Takahashi, H., Nakamura, Y., Suzuki, M., Sakakibara, H., Kojima, M., Akiyama, K., Kurotani, A., Seki, M., Fujita, M., Enju, A., Yokotani, N., Saitou, T., Ashidate, K., Fujimoto, N., Ishikawa, Y., Mori, Y., Nanba, R., Takata, K., Uno, K., Sugano, S., Natsuki, J., Dubouzet, JG., Maeda, S., Ohtake, M., Mori, M., Oda, K., Takatsuji, H., Hirochika, H., and Matsui, M.;
   "Systematic approaches to using the FOX hunting system to identify useful rice genes."
   Plant Journal, 57, 883-894 (2009)
5. Akiyama, K., Chikayama, E., Yuasa, H., Shimada, Y., Tohge, T., Shinozaki, K., Hirai, MY., Sakurai, T., Kikuchi, J., and Saito, K.:
   "PRIMe: a Web site that assembles tools for metabolomics and transcriptomics."
   In Silico Biol., 8, 339-345 (2008)
6. Umezawa, T., Sakurai, T., Totoki, Y., Toyoda, A., Seki, M., Ishiwata, A., Akiyama, K., Kurotani, A., Yoshida, T., Mochida, K., Kasuga, M., Todaka, D., Maruyama, K., Nakashima, K., Enju, A., Mizukado, S., Ahmed, S., Yoshiwara, K., Harada, K., Tsubokura, Y., Hayashi, M., Sato, S., Anai, T., Ishimoto, M., Funatsuki, H., Teraishi, M., Osaki, M., Shinano, T., Akashi, R., Sakaki, Y., Yamaguchi-Shinozaki, K., and Shinozaki, K.:
   "Sequencing and analysis of approximately 40,000 soybean cDNA clones from a full-length-enriched cDNA library."
   DNA Res, 15, 333-346 (2008)
7. Sakurai, T., Plata, G., Rodriguez-Zapata, F., Seki, M., Salcedo, A., Toyoda, A., Ishiwata, A., Tohme, J., Sakaki, Y., Shinozaki, K., and Ishitani, M.:
   "Sequencing analysis of 20.000 full-length cDNA clones from cassava reveals lineage specific expansions in gene families related to stress response."
   BMC Plant Biology, 7, 66 (2007)
8. Nanjo, T., Sakurai, T., Totoki, Y., Toyoda, A., Nishiguchi, M., Kado, T., Igasaki, T., Futamura, N., Seki, M., Sakaki, Y., Shinozaki, K., and Shinohara, K.:
   "Functional annotation of 19,841 Populus nigra full-length enriched cDNA clones."
   BMC Genomics, 8, 448 (2007)
9. Itoh, T., Tanaka, T., Barrero, RA., Yamasaki, C., Fujii, Y., Hilton, PB., Antonio, BA., Aono, H., Apweiler, R., Bruskiewich, R., Bureau, T., Burr, F., Costa de Oliveira, A., Fuks, G., Habara, T., Haberer, G., Han, B., Harada, E., Hiraki, AT., Hirochika, H., Hoen, D., Hokari, H., Hosokawa, S., Hsing, Y., Ikawa, H., Ikeo, K., Imanishi, T., Ito, Y., Jaiswal, P., Kanno, M., Kawahara, Y., Kawamura, T., Kawashima, H., Khurana, JP., Kikuchi, S., Komatsu, S., Koyanagi, KO., Kubooka, H., Lieberherr, D., Lin, YC., Lonsdale, D., Matsumoto, T., Matsuya, A., McCombie, WR., Messing, J., Miyao, A., Mulder, N., Nagamura, Y., Nam, J., Namiki, N., Numa, H., Nurimoto, S., O'Donovan, C., Ohyanagi, H., Okido, T., Oota, S., Osato, N., Palmer, LE., Quetier, F., Raghuvanshi, S., Saichi, N., Sakai, H., Sakai, Y., Sakata, K., Sakurai, T., Sato, F., Sato, Y., Schoof, H., Seki, M., Shibata, M., Shimizu, Y., Shinozaki, K., Shinso, Y., Singh, NK., Smith-White, B., Takeda, JI., Tanino, M., Tatusova, T., Thongjuea, S., Todokoro, F., Tsugane, M., Tyagi, AK., Vanavichit, A., Wang, A., Wing, RA., Yamaguchi, K., Yamamoto, M., Yamamoto, N., Yu, Y., Zhang, H., Zhao, Q., Higo, K., Burr, B., Gojobori, T., and Sasaki, T.:
   "Curated genome annotation of Oryza sativa ssp. japonica and comparative genome analysis with Arabidopsis thaliana."
   Genome Res., 17, 175-183 (2007)
10. Sakurai, T., Satou, M., Akiyama, K., Iida, K., Seki, M., Kuromori, T., Ito, T., Konagaya, A., Toyoda, T., and Shinozaki, K.:
    "RARGE: a large-scale database of RIKEN Arabidopsis resources ranging from transcriptome to phenome."
    Nucleic Acids Res., 33, D647-D650 (2005).

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