List of Selected Publications

1. T Suzuki, M Nakano-Ikegaya, H Yabukami-Okuda, M De Hoon, J Severin, S Saga-Hatano, J W. Shin, A Kubosaki, C Simon, Y Hasegawa, Y Hayashizaki, H Suzuki,:
   "Reconstruction of Monocyte Transcriptional Regulatory Network Accompanies Monocytic Functions in Human Fibroblasts."
   PLoS One (2012 accepted)
2. Hasegawa Y, Takahashi N, Forrest AR, Shin JW, Kinoshita Y, Suzuki H, Hayashizaki Y.:
   "CC chemokine ligand 2 and leukemia inhibitory factor cooperatively promote pluripotency in mouse induced pluripotent cells."
   Stem Cells. 29(8):1196-205 (2011)
3. Ravasi T, Suzuki H, Cannistraci CV, Katayama S, Bajic VB, Tan K, Akalin A, Schmeier S, Kanamori-Katayama M, Bertin N, Carninci P, Daub CO, Forrest AR, Gough J, Grimmond S, Han JH, Hashimoto T, Hide W, Hofmann O, Kamburov A, Kaur M, Kawaji H, Kubosaki A, Lassmann T, van Nimwegen E, MacPherson CR, Ogawa C, Radovanovic A, Schwartz A, Teasdale RD, Tegnér J, Lenhard B, Teichmann SA, Arakawa T, Ninomiya N, Murakami K, Tagami M, Fukuda S, Imamura K, Kai C, Ishihara R, Kitazume Y, Kawai J, Hume DA, Ideker T, Hayashizaki Y.:
   "An atlas of combinatorial transcriptional regulation in mouse and man."
   Cell. 140(5), 744-752 (2010)
4. A Forrest, M Kanamori, Y Tomaru, T Lassmann, N Ninomiya, Y Takahashi, MJ De Hoon, A Kubosaki, A Kaiho, M Suzuki, J Yasuda, Y Hayashizaki, DA Hume, H Suzuki.:
   "Induction of microRNAs mir-155, mir-222, mir-424 and mir-503, promotes monocytic differentiation through combinatorial regulation."
   Leukemia, 24, 1-7 (2009)
5. H Suzuki, A Forrest, E van Nimwegen, CO Daub, P Balwierz, KM Irvine, T Lassmann, T Ravasi, Y Hasegawa, MJ De Hoon, S Katayama, K Schroder, P Carninci, Y Tomaru, M Kanamori, A Kubosaki, A Akalin, Y Ando, E Arner, M Asada, H Asahara, T Bailey, VB Bajic, D Bauer, A Beckhouse, N Bertin, J Björkegren, F Brombacher, E Bulger, A Chalk, J Chiba, N Cloonan, A Dawe, J Dostie, P Engstrom, M Essack, GJ Faulkner, J Fink, D Fredman, K Fujimori, M Furuno, T Gojyobori, J Gough, S Grimmond, M Gustafsson, M Hashimoto, T Hashimoto, M Hatakeyama, S Heinzel, W Hide, O Hofmann, M Hornquist, L Huminiecki, K Ikeo, N Imamoto, S Inoue, Y Inoue, R Ishihara, T Iwayanagi, A Jacobsen, M Kaur, H Kawaji, M Kerr, R Kimura, S Kimura, Y Kimura, H Kitano, H Koga, T Kojima, S Kondo, T Konno, A Krogh, A Kruger, A Kumar, B Lenhard, A Lennartsson, M Lindow, M Lizio, CR MacPherson, N Maeda, C Maher, M Maqungo, JC Mar, N Matigian, H Matsuda, J Mattick, S Meier, S Miyamoto, E Miyamoto-Sato, K Nakabayashi, Y Nakachi, M Nakano, S Nygaard, T Okayama, Y Okazaki, H Okuda-Yabukami, V Orlando, J Otomo, M Pachkov, N Petrovsky, C Plessy, J Quackenbush, A Radovanovic, M Rehli, R Saito, A Sandelin, S Schmeier, C Schonbach, A Schwartz, C Semple, M Sera, J Severin, K Shirahige, C Simons, G St. Laurent, M Suzuki, T Suzuki, M Sweet, RJ Taft, S Takeda, Y Takenaka, K Tan, M Taylor, R Teasdale, J Tegnér, S Teichmann, E Valen, C Wahlestedt, K Waki, A Waterhouse, C Wells, O Winther, L Wu, K Yamaguchi, H Yanagawa, J Yasuda, M Zavolan, DA Hume, T Arakawa, S Fukuda, K Imamura, C Kai, A Kaiho, T Kawashima, C Kawazu, Y Kitazume, M Kojima, H Miura, K Murakami, M Murata, N Ninomiya, H Nishiyori, S Noma, C Ogawa, T Sano, C Simon, M Tagami, Y Takahashi, J Kawai, Y Hayashizaki.:
   "The transcriptional network that controls growth arrest and differentiation in a human myeloid leukemia cell line"
   Nature Genetics, 41 (5), 553-562 (2009)
6. GJ Faulkner, Y Kimura, CO Daub, S Wani, C Plessy, KM Irvine, K Schroder, N Cloonan, AL Steptoe, T Lassmann, K Waki, N Hornig, T Arakawa, H Takahashi, J Kawai, A Forrest, H Suzuki, Y Hayashizaki, DA Hume, V Orlando, S Grimmond, P Carninci,:
   "The regulated retrotransposon transcriptome of mammalian cells"
   Nat Genet, 41(5), 563-571 (2009)
7. RJ Taft, E Glazov, N Cloonan, C Simons, S Stephen, GJ Faulkner, T Lassmann, A Forrest, S Grimmond, K Schroder, KM Irvine, T Arakawa, M Nakamura, A Kubosaki, K Hayashida, C Kawazu, M Murata, H Nishiyori, S Fukuda, J Kawai, CO Daub, DA Hume, H Suzuki, V Orlando, P Carninci, Y Hayashizaki, J Mattick.:
   "The Transcriptional Landscape of the Mammalian Genome.Tiny RNAs associated with transcription start sites in animals"
   Nat Genet, 41:5, 572-578 (2009)
8. Kubosaki A, Tomaru Y, Tagami M, Arner E, Miura H, Suzuki T, Suzuki M, Suzuki H, Hayashizaki Y.
   "Genome-wide investigation of in vivo EGR-1 binding sites in monocytic differentiation."
   Genome Biol.10(4), R41 (2009)
9. Mitani Y, Lezhava A, Kawai Y, Kikuchi T, Oguchi-Katayama A, Kogo Y, Itoh M, Miyagi T, Takakura H, Hoshi K, Kato C, Arakawa T, Shibata K, Fukui K, Masui R, Kuramitsu S, Kiyotani K, Chalk A, Tsunekawa K, Murakami M, Kamataki T, Oka T, Shimada H, Cizdziel PE, Hayashizaki Y.
   "Rapid SNP diagnostics using asymmetric isothermal amplification and a new mismatch-suppression technology."
   Nat Methods 4(3) 257-262 (2007)
10. Carninci P, Sandelin A, Lenhard B, Katayama S, Shimokawa K, Ponjavic J, Semple CA, Taylor MS, Engström PG, Frith MC, Forrest AR, Alkema WB, Tan SL, Plessy C, Kodzius R, Ravasi T, Kasukawa T, Fukuda S, Kanamori-Katayama M, Kitazume Y, Kawaji H, Kai C, Nakamura M, Konno H, Nakano K, Mottagui-Tabar S, Arner P, Chesi A, Gustincich S, Persichetti F, Suzuki H, Grimmond SM, Wells CA, Orlando V, Wahlestedt C, Liu ET, Harbers M, Kawai J, Bajic VB, Hume DA, Hayashizaki Y.
    "Genome-wide analysis of mammalian promoter architecture and evolution."
    Nat Genet. 38: 626-35. (2006)

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Genome Profiling Technology Unit