List of Selected Publications

1. Ravasi T, Suzuki H, Cannistraci CV, Katayama S, Bajic VB, Tan K, Akalin A, Schmeier S, Kanamori-Katayama M, Bertin N, Carninci P, Daub CO, Forrest AR, Gough J, Grimmond S, Han JH, Hashimoto T, Hide W, Hofmann O, Kamburov A, Kaur M, Kawaji H, Kubosaki A, Lassmann T, van Nimwegen E, MacPherson CR, Ogawa C, Radovanovic A, Schwartz A, Teasdale RD, Tegnér J, Lenhard B, Teichmann SA, Arakawa T, Ninomiya N, Murakami K, Tagami M, Fukuda S, Imamura K, Kai C, Ishihara R, Kitazume Y, Kawai J, Hume DA, Ideker T, Hayashizaki Y.:
   "An atlas of combinatorial transcriptional regulation in mouse and man."
   Cell. 140(5):744-752 (2010)
2. H Suzuki, A Forrest, E van Nimwegen, CO Daub, P Balwierz, KM Irvine, T Lassmann, T Ravasi, Y Hasegawa, MJ De Hoon, S Katayama, K Schroder, P Carninci, Y Tomaru, M Kanamori, A Kubosaki, A Akalin, Y Ando, E Arner, M Asada, H Asahara, T Bailey, VB Bajic, D B.:
   "The transcriptional network that controls growth arrest and differentiation in a human myeloid leukemia cell line"
   Nature Genetics, 41 (5), 553-562 (2009)
3. A Kubosaki, Y Tomaru, M Tagami, E Arner, H Miura, T Suzuki, M Suzuki, H Suzuki, Y Hayashizaki,:
   "Genome-wide investigation of in vivo EGR-1 binding sites in monocytic differentiation"
   Genome Biology, 10 (R41), 1-14 (2009)
4. GJ Faulkner, Y Kimura, CO Daub, S Wani, C Plessy, KM Irvine, K Schroder, N Cloonan, AL Steptoe, T Lassmann, K Waki, N Hornig, T Arakawa, H Takahashi, J Kawai, A Forrest, H Suzuki, Y Hayashizaki, DA Hume, V Orlando, S Grimmond, P Carninci,:
   "The regulated retrotransposon transcriptome of mammalian cells"
   Nat Genet, 41(5), 563-571 (2009)
5. RJ Taft, E Glazov, N Cloonan, C Simons, S Stephen, GJ Faulkner, T Lassmann, A Forrest, S Grimmond, K Schroder, KM Irvine, T Arakawa, M Nakamura, A Kubosaki, K Hayashida, C Kawazu, M Murata, H Nishiyori, S Fukuda, J Kawai, CO Daub, DA Hume, H Suzuki, V Orl,:
   "Tiny RNAs associated with transcription start sites in animals"
   Nat Genet, 41:5, 572-578 (2009)
6. Carninci P, Sandelin A, Lenhard B, Katayama S, Shimokawa K, Ponjavic J, Semple CA, Taylor MS, Engström PG, Frith MC, Forrest AR, Alkema WB, Tan SL, Plessy C, Kodzius R, Ravasi T, Kasukawa T, Fukuda S, Kanamori-Katayama M, Kitazume Y, Kawaji H, Kai C, Naka,:
   "Genome-wide analysis of mammalian promoter architecture and evolution"
   Nat Genet, 38, 626-635 (2006)
7. Harukazu Suzuki, Alistair Forrest, Erik van Nimwegen, Carsten Daub, Piotr Balwierz, Katharine Irvine, Timo Lassmann, Timothy Ravasi, Yuki Hasegawa, Michiel De Hoon, Shintaro Katayama, Kate Schroder, Piero Katayama S, Tomaru Y, Kasukawa T, Waki K, Nakanishi,:
   "Antisense transcription in the mammalian transcriptome"
   Science, 309, 1564-1566 (2005)
8. Carninci P, Kasukawa T, Katayama S, Gough J, Frith MC, Maeda N, Oyama R, Ravasi T, Lenhard B, Wells C, Kodzius R, Shimokawa K, Bajic VB, Brenner SE, Batalov S, Forrest AR, Zavolan M, Davis MJ, Wilming LG, Aidinis V, Allen JE, Ambesi-Impiombato A, Apweiler,:
   "The transcriptional landscape of the mammalian genome"
   Science, 309, 1559-1563 (2005)
9. Okazaki Y, Furuno M, Kasukawa T, Adachi J, Bono H, Kondo S, Nikaido I, Osato N, Saito R, Suzuki H, Yamanaka I, Kiyosawa H, Yagi K, Tomaru Y, Hasegawa Y, Nogami A, Schönbach C, Gojobori T, Baldarelli R, Hill DP, Bult C, Hume DA, Quackenbush J, Schriml LM.:
   "Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs"
   Nature, 420, 563-573 (2002)
10. Kawai J, Shinagawa A, Shibata K, Yoshino M, Itoh M, Ishii Y, Arakawa T, Hara A, Fukunishi Y, Konno H, Adachi J, Fukuda S, Aizawa K, Izawa M, Nishi K, Kiyosawa H, Kondo S, Yamanaka I, Saito T, Okazaki Y, Gojobori T, Bono H, Kasukawa T, Saito R, Kadota K, M.:
    "Functional annotation of a full-length mouse cDNA collection"
    Nature, 409, 685-690 (2001)

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Genome Technology Practical Implementation Unit