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Laboratory for Molecular Mechanisms of Thalamus Development
Tomomi SHIMOGORI
Laboratory Head
Tomomi SHIMOGORI (Ph.D.)
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Research Areas

Diencephalon, contains developing thalamus and hypothalamus, make direct connection to the neocortex, hippocampus and amygdala, respectively, and known to function to maintain higher order cognition and homeostasis. In later developmental time point such as circuit formation stage, it is likely that input from thalamus and hypothalamus influence postsynaptic neurons and change their gene expression, cell survival and dendrite formation by neuronal activity.
To understand how thalamus and hypothalamus can control correct circuit formation and control animals behavior, we are currently focusing on following three projects. First, we use mouse somatosensory barrel cortex which development is controlled by thalamic axon innervation, to reveal molecular mechanism of postsynaptic neuron development. Next, we study molecular mechanism of brain dysfunction in developing hypothalamus, which is triggered by maternal separation. At last, we use common marmoset brain to test gene expression, which is different with mouse cortex, thalamus and hypothalamus to understand mechanism of higher function brain evolution.

Research Subject

  1. Role of thalamocortical axons on thalamocortical circuit development.
  2. Effect of maternal separation on hypothalamic development and behaviour.
  3. Molecular mechanism of higher functional brain development in marmoset.

Related links

  1. RIKEN Brain Science Institute Website_Laboratories PageNew Window

Press release

May 03, 2010
Gene database created for the hypothalamus, which regulates instinct and emotional action
August 13, 2008
Elucidation of the mechanism of formation of thalamus functional domains as an information mediator for the cerebral cortex

RIKEN RESEARCH

July 16, 2010
Mapping brain development
A large-scale genetic analysis provides a molecular atlas of a complex brain structure, the hypothalamusNew Window
November 27, 2009
Deducing the evolution of the cerebral cortex from the thalamusNew Window

List of Selected Publications

  1. Shimogori T and Ogawa M.:
    "Gene application with in utero electroporation in mouse embryonic brain."
    Dev Growth Differ. 50;499-506. (2008)
  2. Kataoka A and Shimogori T.:
    "FGF8 controls regional identity in the developing thalamus."
    Development. 135; 2873-81 (2008)
  3. Suzuki-Hirano A and Shimogori T.:
    "The role of Fgf8 in telencephalic and diencephalic patterning."
    Semin. Cell. Devbiol. 20; 719-725 (2009)
  4. Fabre P, Shimogori T, Charron F.:
    "Segregation of ipsilateral retinal ganglion cell axons at the optic chiasm requires the Shh receptor Boc."
    J Neurosci. 30; 266-75. (2010)
  5. Shimogori T, Lee DA, Miranda-Angulo A, Yang Y, Jiang L, Yoshida AC, Kataoka A, Mashiko H, Avetisyan M, Qi L, Qian J, and Blackshaw S.:
    "A genomic atlas of mouse hypothalamic development."
    Nat Neurosci. 13:767-75. (2010)
  6. Toyoda R, Assimacopoulos S, Wilcoxon J, Taylor A, Feldman P, Suzuki-Hirano A, Shimogori T, Grove EA.:
    "FGF8 acts as a classic diffusible morphogen to pattern the neocortex."
    Development. 137:3439-48. (2010)
  7. Blackshaw S, Scholpp S, Placzek M, Ingraham H, Simerly R, Shimogori T.:
    "Molecular pathways controlling development of thalamus and hypothalamus: from neural specification to circuit formation."
    J Neurosci. 30:14925-30. (2010)
  8. Suzuki-Hirano A, Ogawa M, Kataoka A, Yoshida AC, Itoh D, Ueno M, Blackshaw S, Shimogori T.:
    "Dynamic spatiotemporal gene expression in embryonic mouse thalamus."
    J Comp Neurol. 519; 528-43. (2011)
  9. Yuge K, Kataoka A, Yoshida AC, Itoh D, Aggarwal M, Mori S, Blackshaw S, Shimogori T.:
    "Region-specific expression in early postnatal mouse thalamus."
    J Comp Neurol. 519; 544-61. (2011)
  10. Matsui A, Yoshida AC, Kubota M, Ogawa M and Shimogori T.:
    "Mouse in utero electroporation: Controlled spatio-temporal gene transefection."
    J Vis Exp. 54 pii: 3024. doi: 10.3791/3024. (2010)

Members

Principal Investigator

Tomomi SHIMOGORI
Laboratory Head

Members

Asuka MATSUI
Research Scientist
Miyako HIRABAYASHI
Research Scientist
Nagatoki KINOSHITA
Research Scientist
Asuka HIRANO
Visiting Researcher
Yurie MAEDA
Research Associate
Hiromi MASHIKO
Technical Staff I
Mami U
Technical Staff I
Yoshiko ABE
Technical Staff I
Aya YOSHIDA
Technical Staff II
Satomi KIKUCHI
Technical Staff II
Ayumi ABE
Assistant
Hiroaki KANKI
Visiting Scientist
Takaki MIYATA
Visiting Scientist
Masaharu OGAWA
Part-time Staff