Laboratories
Laboratory for Neural Circuit Theory
Tomoki FUKAI
Laboratory Head
Tomoki FUKAI (Ph.D.)
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Research Areas

Our team attempts to clarify the functional roles of the brain circuitry in cognitive behaviors through computational analyses. Higher brain functions, such as learning and memory, motor planning and decision making, engage a wide variety of dynamical systems, from intracellular signaling cascades to interacting neuronal ensembles, in processing information. We study the mechanisms of neural information coding by study the dynamics and functions of networks of spiking neurons analytically or by simulating the behavior of realistic neurons and their networks numerically. Recently, we are particularly interested in understanding the network structure and computational functions of cortical microcircuits. The neuronal network occupying roughly a cubic millimeter of cortical volume can in several respects be regarded as the elementary functional unit of the neocortex. The unit has a six layer structure with a different distribution of neuron types in each layer. The structure exhibits a striking homogeneity across areas engaged in very different computational tasks. This raises a hope that universal laws can be discovered governing the neocortical processing of information. We attempt to create a prototypical model that captures the important properties of the cortical microcircuit. This is still challenging since even such a prototype model is currently not available. To achieve the above goal, we employ multiunit and juxtacellular recordings from the brain of behaving rats to obtain activities of multiple cortical neurons with those of identified neurons. In addition, we perform dynamic clamp experiments to test the hypotheses emerging from theoretical studies. We develop powerful data analysis methods to analyze the multiunit data.

Research Subject

  1. Modeling cortical microcircuits
  2. Analysis tools for multiunit data
  3. Information processing by neural networks
  4. Multiunit and juxtacellular recordings from the brain of behaving rats
  5. Neural mechanisms of decision making

Related links

  1. RIKEN Brain Science Institute Website_Laboratories PageNew Window
  2. Individual Website Laboratory PageNew Window

Press release

November 09, 2009
Shaping the way we move

RIKEN RESEARCH

January 15, 2010
Shaping and sharpening movements
A new recording method shows how microcircuitry in the motor cortex of the brain controls voluntary movementsNew Window
March 28,2008
Synchronized spiking
Oscillating neurons knock their neighbors into step to produce signals that can survive the journey through the nervous systemNew Window
February 16, 2007
Not just counting sheep
Research has revealed neuronal firing patterns that could help explain how the brain makes memories during deep sleep New Window

List of Selected Publications

  1. Matthieu Gilson and Tomoki Fukai;
    " Stability versus Neuronal Specialization for STDP: Long-Tail Weight Distributions Solve the Dilemma."
    PLoS one 6(10): e25339 (2011).
  2. Nobuhiko Wagatsuma, Tobias C. Potjans, Markus Diesmann, and Tomoki Fukai;
    " Layer-dependent attentional processing by top-down signals in a visual cortical microcircuit model."
    Frontiers in Computational Neuroscience 5: doi: 10.3389/fncom.2011.00031 (2011).
  3. Takashi Takekawa, Yoshikazu Isomura, and Tomoki Fukai;
    " Accurate spike-sorting for multiunit recordings."
    European Journal of Neuroscience 31(2): 263-272 (2010).
  4. Yoko Yazaki-Sugiyama, Siu Kang, Hideyuki Cateau, Tomoki Fukai, and Takao K. Hensch;
    " Bidirectional plasticity in fast-spiking GABA circuits by visual experience."
    Nature 462: 218-221 (2009).
  5. Yoshikazu Isomura, Rie Harukuni, Takashi Takekawa, Hidenori Aizawa, and Tomoki Fukai;
    " Microcircuitry coordination of cortical motor information in self-initiation of voluntary movements."
    Nature Neuroscience 12: 1586-1593 (2009).
  6. Hiroshi Okamoto and Tomoki Fukai;
    " Recurrent network models for perfect temporal integration of fluctuating correlated inputs."
    PLoS Computational Biology 5(6): e1000404 (2009).
  7. Jun-nosuke Teramae and Tomoki Fukai;
    " Temporal precision of spike response to fluctuating input in pulse-coupled networks of oscillating neurons."
    Physical Review Letters 101: 248105 (2008).
  8. Siu Kang, Katsunori Kitano and Tomoki Fukai;
    " Structure of spontaneous UP and DOWN transitions self-organizing in a cortical network model."
    PLoS Computational Biology 4(3): e1000022 (2008).
  9. Keiji Miura, Yasuhiro Tsubo, Masato Okada and Tomoki Fukai;
    " Balanced excitatory and inhibitory inputs to cortical neurons decouple firing irregularity from rate modulations."
    The Journal of Neuroscience 27:13802-13812 (2007).
  10. Yasuhiro Tsubo, Jun-nosuke Teramae, and Tomoki Fukai;
    " Synchronization of excitatory neurons with strongly heterogeneous phase responses."
    Physical Review Letters 99:228101 (2007).

Members

Principal Investigator

Tomoki FUKAI
Laboratory Head

Members

Junnosuke TERAMAE
Deputy Laboratory Head
Takashi TAKEKAWA
Research Scientist
Yasuhiro TSUBO
Research Scientist
Matthieu GILSON
Research Scientist
Florence KLEBERG
Research Scientist
Takashi HANDA
Research Scientist
Nobuhiko WAGATSUMA
Research Scientist
Kensuke ARAI
Research Scientist
Naoki HIRATANI
Student Trainee
Takatsuna SHIMAZAKI
Student Trainee
Rie HARUKUNI
Technical Staff I
Keiko SADAYASU
Assistant
Masato OKADA
Senior Visiting Scientist
Siu KANG
Visiting Scientist
Yoshikazu ISOMURA
Visiting Scientist
Yutaka SAKAI
Visiting Scientist
Katsunori KITANO
Visiting Scientist
Toshio AOYAGI
Visiting Scientist
Hiroshi OKAMOTO
Visiting Scientist
Alexander REYES
Visiting Scientist
Markus DIESMANN
Visiting Scientist
Moritz Julian HELIAS
Visiting Scientist
Hiroaki WAGATSUMA
Visiting Scientist
Siu KANG
Visiting Scientist
Jun TANI
Visiting Scientist
Cornelis Cyrinus VAN LEEUWEN
Visiting Scientist
Tatsunori HASHIMOTO
Research Collaborative Advisor
Yuka TAKEUCHI
Part-time Staff