- RIKEN Wako Institute
- RIKEN Advanced Science Institute
- RIKEN Brain Science Institute
- RIKEN Nishina Center for Accelerator-Based Science
- RIKEN Tsukuba Institute
- RIKEN BioResource Center
- RIKEN Harima Institute
- RIKEN SPring-8 Center
- RIKEN Yokohama Institute
- RIKEN Plant Science Center
- RIKEN Center for Genomic Medicine
- RIKEN Research Center for Allergy and Immunology
- RIKEN Omics Science Center
- RIKEN Systems and Structural Biology Center
- RIKEN Bioinformatics And Systems Engineering division
- RIKEN Center of Research Network for Infectious Diseases
- RIKEN Kobe Institute
- RIKEN Center for Developmental Biology
- RIKEN Center for Molecular Imaging Science
- RIKEN Quantitative Biology Center
- RIKEN HPCI Program for Computational Life Sciences
- RIKEN Research Cluster for Innovation
- RIKEN Innovation Center
- RIKEN Program for Drug Discovery and Medical Technology Platforms
- RIKEN Biomass Engineering Program
- Computational Science Research Program
- RIKEN Advanced Institute for Computational Science
